PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pbr037179.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Pyrus
Family NAC
Protein Properties Length: 247aa    MW: 28294.9 Da    PI: 9.9474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pbr037179.1genomeCPETRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM101.61.1e-3111341128
          NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..k 96 
                  +p+G+rF+Ptdeelv +yL +kv++ +l++ ++i+e+d+++++P+ Lp  v  +e++++f+ +  +ky      +ra+  gyWk  gk+k+++++  +
  Pbr037179.1   1 MPVGYRFRPTDEELVIHYLMRKVHAAPLPA-SIIPEFDVFQTHPSGLPGDV--RETRYFFYNEIMNKY----VGKRAAGCGYWKPIGKKKQIVANskS 91 
                  699***************************.89***************554..556666666666666....46889999*************98667 PP

          NAM  97 gelvglkktLvfy...........kgrapkgektdWvmheyrl 128
                  +e+vg++ktL f            +++++++++t+W+mheyrl
  Pbr037179.1  92 NEAVGIRKTLGFCerkrrgchnhhHETTKTTTQTRWLMHEYRL 134
                  778**********77776665554366777789********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.8991160IPR003441NAC domain
SuperFamilySSF1019416.93E-361160IPR003441NAC domain
PfamPF023655.0E-212134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MPVGYRFRPT DEELVIHYLM RKVHAAPLPA SIIPEFDVFQ THPSGLPGDV RETRYFFYNE  60
IMNKYVGKRA AGCGYWKPIG KKKQIVANSK SNEAVGIRKT LGFCERKRRG CHNHHHETTK  120
TTTQTRWLMH EYRLVASQAN PTQAFKAGVG NWVLFRIFQK KRRPTQRTSD DMGVVSQRSS  180
NCKRNRRLVE EYISAADHRS RRSDPDLTTV SSPSCSSDIT HELTSNDNGE LDDDQEEHSV  240
SMRINI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4dul_B2e-20116117166NAC domain-containing protein 19
4dul_A2e-20116117166NAC domain-containing protein 19
1ut7_B2e-20116117166NO APICAL MERISTEM PROTEIN
1ut7_A2e-20116117166NO APICAL MERISTEM PROTEIN
1ut4_B2e-20116117166NO APICAL MERISTEM PROTEIN
1ut4_A2e-20116117166NO APICAL MERISTEM PROTEIN
3swp_D2e-20116120169NAC domain-containing protein 19
3swp_C2e-20116120169NAC domain-containing protein 19
3swp_B2e-20116120169NAC domain-containing protein 19
3swp_A2e-20116120169NAC domain-containing protein 19
3swm_D2e-20116120169NAC domain-containing protein 19
3swm_C2e-20116120169NAC domain-containing protein 19
3swm_B2e-20116120169NAC domain-containing protein 19
3swm_A2e-20116120169NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009344208.10.0PREDICTED: NAC transcription factor NAM-1-like
RefseqXP_009352244.10.0PREDICTED: NAC transcription factor NAM-1-like
TrEMBLD9ZJA61e-145D9ZJA6_MALDO; NAC domain class transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70434139
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.13e-37NAC domain containing protein 83